I'm having trouble applying a regex to keep only one of two specific consecutive characters in a column. I have the following file in which C-O appears for number 1 and number 2, as indicated. I would like to write a new file in which only C-O in number 1 is present. This functionality needs to be repeated throughout the file, for example between number 2 and 3 (keep number 2), and number 3 and 4 (keep number 3) etc .
Input:
1 H 27.5310
1 H 27.0882
1 C 36.8857
1 O -118.2564
2 C 36.6954
2 O -118.5597
2 N 133.6704
2 H 28.3581
Output:
1 H 27.5310
1 H 27.0882
1 C 36.8857
1 O -118.2564
2 N 133.6704
2 H 28.3581
This is what I have so far, hope my logic is semi-clear. I'm still learning and any commentary is greatly appreciated!
#!/usr/bin/perl
use strict;
use warnings;
my $file = 'data.txt';
open my $fh, '<', $file or die "Can't read $file: $!";
while (my $line = <fh>) {
chomp;
my @column = split(/\t/,$line);
if ($column[1] =~ s/COCO/\s+/g) {
print "@columns\n";
}
}
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