i have a list with character elemnts and i need the location of several patterns i need to extract it from the $ tip.label i can do it for one pattern with
lapply(complete.tree, function(ch) grep("Scaptotrigona_tricolorata", ch))$tip.label
but how can i do it for several very different patterns?? i tried a loop
for (i in species) {
x[i]= lapply(complete.tree, function(ch) grep("i", ch))$tip.label
}
"species" is a vector with all the names i need
any advise will help! this is the list
> str(complete.tree)
List of 5
$ edge : int [1:332, 1:2] 168 169 170 170 171 172 173 173 174 175 ...
$ edge.length: num [1:332] 24.2 0 77.8 39.38 2.63 ...
$ Nnode : int 166
$ node.label : chr [1:166] "54" "133" "135" "71" ...
$ tip.label : chr [1:167] "Bombus" "Scaptotrigona_polysticta" "Scaptotrigona_sp._B_CR-2009" "Scaptotrigona_sp._A_CR-2009" ...
- attr(*, "class")= chr "phylo"
- attr(*, "order")= chr "cladewise"
Aucun commentaire:
Enregistrer un commentaire